rs581458048 SNP Detail

Summary

• ID
  rs581458048
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:100126208 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCGAG GCCTAATGGC GGGGAGGGGG
  A
  GGGGGCCTGG CGAGCGGCTG CCCGG                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	CZECHII/EiJ	MA/MyJ	NON/ShiLtJ	QSi3/Ianm	RIIIS/J	SWR/J
ss917584351	MGP_WTSI_5_99978349	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	CZECHII/EiJ	MA/MyJ	NON/ShiLtJ	QSi3/Ianm	RIIIS/J	SWR/J
rs581458048					SNP	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917584351	MGP_WTSI_5_99978349	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:100126208 () rs orientation: forward

Symbol	Name	Function Class
4930524J08Rik	RIKEN cDNA 4930524J08 gene	586 bp upstream
Cpgi16102	CpG island 16102	within coordinates
Gm17092	predicted gene 17092	within coordinates
Hnrnpd	heterogeneous nuclear ribonucleoprotein D	within coordinates
Rr378342	regulatory region 378342	89 bp upstream
Tssr47472	transcription start site region 47472	154 bp upstream
Tssr47473	transcription start site region 47473	222 bp upstream
Tssr47474	transcription start site region 47474	320 bp upstream
Tssr52063	transcription start site region 52063	1756 bp upstream
Tssr52064	transcription start site region 52064	499 bp downstream
Tssr52065	transcription start site region 52065	553 bp downstream
Tssr52066	transcription start site region 52066	565 bp downstream