rs581468241 SNP Detail

Summary

• ID
  rs581468241
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:3397526 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGCC TCATATACTC ACATGCAACT
  S
  TCCAGCTCTG ACCCTCAGCT ACTCA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CZECHII/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWK/PhJ	RIIIS/J	SEA/GnJ	SPRET/EiJ	WSB/EiJ
ss917804179	MGP_WTSI_6_3397526	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	G	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CZECHII/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWK/PhJ	RIIIS/J	SEA/GnJ	SPRET/EiJ	WSB/EiJ
rs581468241					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917804179	MGP_WTSI_6_3397526	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:3397526 () rs orientation: forward

Symbol	Name	Function Class
Rr146111	regulatory region 146111	1125 bp distal
Rr146113	regulatory region 146113	within coordinates
Rr378834	regulatory region 378834	within coordinates
Rr399551	regulatory region 399551	1867 bp upstream
Samd9l	sterile alpha motif domain containing 9-like	within coordinates
Tssr59689	transcription start site region 59689	1775 bp downstream
Tssr59690	transcription start site region 59690	1925 bp downstream