rs581472536 SNP Detail

Summary

• ID
  rs581472536
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24660156 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTTT CTCTAGCTGC CCCCTCCCCC
  Y
  AAACATACAC ACACATACAC ACACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss923487120	MGP_WTSI_17_24441182	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	C	C	C	C	C	C	C	T	T	C	T	T	T	C	T	C	T	T	C	T	T	T	C	C	T	T	T	T	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs581472536					SNP	T	T	T	T	T	T	T	C	C	C	C	C	C	C	T	T	C	T	T	T	C	T	C	T	T	C	T	T	T	C	C	T	T	T	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss923487120	MGP_WTSI_17_24441182	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24660156 () rs orientation: forward

Symbol	Name	Function Class
Dnase1l2	deoxyribonuclease 1-like 2	within coordinates
Eci1	enoyl-Coenzyme A delta isomerase 1	1866 bp downstream
Rr329768	regulatory region 329768	1556 bp distal
Rr329769	regulatory region 329769	within coordinates
Rr337043	regulatory region 337043	1253 bp distal
Rr340710	regulatory region 340710	within coordinates
Tssr146730	transcription start site region 146730	783 bp upstream
Tssr146731	transcription start site region 146731	975 bp downstream
Tssr146732	transcription start site region 146732	1895 bp downstream
Tssr146733	transcription start site region 146733	1911 bp downstream