rs581576700 SNP Detail

Summary

• ID
  rs581576700
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:135642904 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGGG GACGGGAGGG GCCGTGTGTG
  W
  GTGTGTGTGT GTGTGTGTGT GTGTG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	RF/J	SJL/J	SWR/J	WSB/EiJ
ss924882362	MGP_WTSI_X_136742155	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A	A	A	A	T	A	A	A	T	A	T	T	T	A	T	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	RF/J	SJL/J	SWR/J	WSB/EiJ
rs581576700					SNP	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A	A	A	A	T	A	A	A	T	A	T	T	T	A	T	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss924882362	MGP_WTSI_X_136742155	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:135642904 () rs orientation: forward

Symbol	Name	Function Class
BC065397	cDNA sequence BC065397	802 bp upstream
Cpgi22954	CpG island 22954	within coordinates
Morf4l2	mortality factor 4 like 2	within coordinates
Rr406170	regulatory region 406170	632 bp downstream
Rr693787	regulatory region 693787	1389 bp distal
Rr693788	regulatory region 693788	1011 bp distal
Rr693789	regulatory region 693789	223 bp distal
Rr693790	regulatory region 693790	within coordinates
Rr693791	regulatory region 693791	753 bp proximal
Rr693792	regulatory region 693792	758 bp proximal
Rr693793	regulatory region 693793	832 bp proximal
Tssr162050	transcription start site region 162050	291 bp downstream
Tssr164188	transcription start site region 164188	1040 bp upstream
Tssr164189	transcription start site region 164189	1027 bp upstream
Tssr164190	transcription start site region 164190	848 bp upstream
Tssr164191	transcription start site region 164191	706 bp upstream
Tssr164192	transcription start site region 164192	79 bp upstream
Tssr164193	transcription start site region 164193	986 bp downstream
Tssr164194	transcription start site region 164194	1520 bp downstream