GGAAT AAAGAAAGAA AGAGAGAAAG R AAGGAAGGAA GAAAGAAAGA AAGAA R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | B10.RIII-H2 |
BALB/cByJ |
C57BL/6J |
C57BL/10J |
C57BL/10SnJ |
C58/J |
NZB/BlNJ |
NZW/LacJ |
PL/J |
QSi3/Ianm |
QSi5/Ianm |
SJL/J |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss916990292 | MGP_WTSI_4_111972142 | EVA_MGPV3 | EVA_MGPV3 | f | SNP | G | A | G | G | G | G | G | G | A | G | G | A |
SNP Consensus Information | |||||||||||||||||
SNP | Consensus Type | B10.RIII-H2 |
BALB/cByJ |
C57BL/6J |
C57BL/10J |
C57BL/10SnJ |
C58/J |
NZB/BlNJ |
NZW/LacJ |
PL/J |
QSi3/Ianm |
QSi5/Ianm |
SJL/J |
||||
rs581581529 | SNP | G | A | G | G | G | G | G | G | A | G | G | A |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss916990292 | MGP_WTSI_4_111972142 | SC_MOUSE_GENOMES | SC_MOUSE_GENOMES | f | SNP | A/G |
Location: Chr4:111829339 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Skint7 | selection and upkeep of intraepithelial T cells 7 | 781 bp upstream | ||||||
Tssr38394 | transcription start site region 38394 | 691 bp upstream | ||||||
Tssr38395 | transcription start site region 38395 | 780 bp upstream | ||||||
Tssr38396 | transcription start site region 38396 | 890 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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