rs581584239 SNP Detail

Summary

• ID
  rs581584239
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137179499 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACAT CAGCAGTGGT GGTGACATCA
  C
  CAGTGGTGGT GACTTCAGCA GTGGT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	JF1/MsJ	KK/HlJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	RIIIS/J	SJL/J	SM/J	ST/bJ
ss917727737	MGP_WTSI_5_137150651	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	JF1/MsJ	KK/HlJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	RIIIS/J	SJL/J	SM/J	ST/bJ
rs581584239					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917727737	MGP_WTSI_5_137150651	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137179499 () rs orientation: forward

Symbol	Name	Function Class
Muc17	mucin 17, cell surface associated	within coordinates
Tssr1677	transcription start site region 1677	1383 bp upstream
Tssr1678	transcription start site region 1678	158 bp upstream
Tssr1679	transcription start site region 1679	776 bp downstream
Tssr1680	transcription start site region 1680	796 bp upstream
Tssr1681	transcription start site region 1681	819 bp downstream
Tssr1682	transcription start site region 1682	836 bp downstream
Tssr1683	transcription start site region 1683	925 bp downstream
Tssr1684	transcription start site region 1684	941 bp downstream
Tssr1685	transcription start site region 1685	955 bp upstream
Tssr1686	transcription start site region 1686	982 bp downstream
Tssr1687	transcription start site region 1687	1033 bp downstream
Tssr1688	transcription start site region 1688	1057 bp downstream
Tssr1689	transcription start site region 1689	1076 bp upstream
Tssr1690	transcription start site region 1690	1243 bp upstream
Tssr1691	transcription start site region 1691	1247 bp downstream
Tssr1692	transcription start site region 1692	1411 bp downstream
Tssr1693	transcription start site region 1693	1553 bp upstream
Tssr1694	transcription start site region 1694	1591 bp downstream
Tssr1695	transcription start site region 1695	1710 bp upstream
Tssr1696	transcription start site region 1696	1767 bp upstream
Tssr49309	transcription start site region 49309	850 bp downstream
Tssr49310	transcription start site region 49310	508 bp downstream
Tssr49311	transcription start site region 49311	484 bp downstream
Tssr49312	transcription start site region 49312	93 bp downstream
Tssr49313	transcription start site region 49313	129 bp upstream
Tssr49314	transcription start site region 49314	400 bp upstream
Tssr49315	transcription start site region 49315	416 bp upstream
Tssr49316	transcription start site region 49316	1332 bp upstream
Tssr49317	transcription start site region 49317	1602 bp upstream
Tssr49318	transcription start site region 49318	1784 bp upstream
Tssr53919	transcription start site region 53919	1003 bp upstream
Tssr53920	transcription start site region 53920	968 bp upstream
Tssr53921	transcription start site region 53921	810 bp upstream
Tssr53922	transcription start site region 53922	794 bp upstream
Tssr53923	transcription start site region 53923	752 bp upstream
Tssr53924	transcription start site region 53924	733 bp upstream
Tssr53925	transcription start site region 53925	701 bp upstream
Tssr53926	transcription start site region 53926	667 bp upstream
Tssr53927	transcription start site region 53927	518 bp upstream
Tssr53928	transcription start site region 53928	505 bp upstream
Tssr53929	transcription start site region 53929	465 bp upstream
Tssr53930	transcription start site region 53930	394 bp upstream
Tssr53931	transcription start site region 53931	376 bp upstream
Tssr53932	transcription start site region 53932	358 bp upstream
Tssr53933	transcription start site region 53933	319 bp upstream
Tssr53934	transcription start site region 53934	286 bp upstream
Tssr53935	transcription start site region 53935	233 bp upstream
Tssr53936	transcription start site region 53936	210 bp upstream
Tssr53937	transcription start site region 53937	125 bp upstream
Tssr53938	transcription start site region 53938	84 bp upstream
Tssr53939	transcription start site region 53939	35 bp upstream
Tssr53940	transcription start site region 53940	131 bp downstream
Tssr53941	transcription start site region 53941	171 bp downstream
Tssr53942	transcription start site region 53942	230 bp downstream
Tssr53943	transcription start site region 53943	395 bp downstream
Tssr53944	transcription start site region 53944	444 bp downstream
Tssr53945	transcription start site region 53945	454 bp downstream
Tssr53946	transcription start site region 53946	475 bp downstream
Tssr53947	transcription start site region 53947	583 bp downstream
Tssr53948	transcription start site region 53948	1479 bp downstream
Tssr53949	transcription start site region 53949	1520 bp downstream
Tssr53950	transcription start site region 53950	1642 bp downstream
Tssr53951	transcription start site region 53951	1754 bp downstream
Tssr53952	transcription start site region 53952	1768 bp downstream
Tssr53953	transcription start site region 53953	1858 bp downstream