rs581592222 SNP Detail

Summary

• ID
  rs581592222
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137178763 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATCA GCAGTGATGG TGACATCAGC
  G
  GTGCTGGTGA AATCAACGGT GGTTG                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	JF1/MsJ	LEWES/EiJ	MOLF/EiJ	NON/ShiLtJ	PL/J	PWK/PhJ	RIIIS/J	SM/J	SPRET/EiJ	ST/bJ
ss917727700	MGP_WTSI_5_137149915	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	JF1/MsJ	LEWES/EiJ	MOLF/EiJ	NON/ShiLtJ	PL/J	PWK/PhJ	RIIIS/J	SM/J	SPRET/EiJ	ST/bJ
rs581592222					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917727700	MGP_WTSI_5_137149915	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137178763 () rs orientation: forward

Symbol	Name	Function Class
Muc17	mucin 17, cell surface associated	within coordinates
Tssr1677	transcription start site region 1677	647 bp upstream
Tssr1678	transcription start site region 1678	569 bp downstream
Tssr1679	transcription start site region 1679	1512 bp downstream
Tssr1680	transcription start site region 1680	1532 bp upstream
Tssr1681	transcription start site region 1681	1555 bp downstream
Tssr1682	transcription start site region 1682	1572 bp downstream
Tssr1683	transcription start site region 1683	1661 bp downstream
Tssr1684	transcription start site region 1684	1677 bp downstream
Tssr1685	transcription start site region 1685	1691 bp upstream
Tssr1686	transcription start site region 1686	1718 bp downstream
Tssr1687	transcription start site region 1687	1769 bp downstream
Tssr1688	transcription start site region 1688	1793 bp downstream
Tssr1689	transcription start site region 1689	1812 bp upstream
Tssr1690	transcription start site region 1690	1979 bp upstream
Tssr1691	transcription start site region 1691	1983 bp downstream
Tssr49309	transcription start site region 49309	114 bp downstream
Tssr49310	transcription start site region 49310	223 bp upstream
Tssr49311	transcription start site region 49311	237 bp upstream
Tssr49312	transcription start site region 49312	617 bp upstream
Tssr49313	transcription start site region 49313	865 bp upstream
Tssr49314	transcription start site region 49314	1136 bp upstream
Tssr49315	transcription start site region 49315	1152 bp upstream
Tssr53919	transcription start site region 53919	267 bp upstream
Tssr53920	transcription start site region 53920	232 bp upstream
Tssr53921	transcription start site region 53921	74 bp upstream
Tssr53922	transcription start site region 53922	58 bp upstream
Tssr53923	transcription start site region 53923	16 bp upstream
Tssr53924	transcription start site region 53924	within coordinates
Tssr53925	transcription start site region 53925	28 bp downstream
Tssr53926	transcription start site region 53926	59 bp downstream
Tssr53927	transcription start site region 53927	208 bp downstream
Tssr53928	transcription start site region 53928	226 bp downstream
Tssr53929	transcription start site region 53929	263 bp downstream
Tssr53930	transcription start site region 53930	328 bp downstream
Tssr53931	transcription start site region 53931	353 bp downstream
Tssr53932	transcription start site region 53932	369 bp downstream
Tssr53933	transcription start site region 53933	407 bp downstream
Tssr53934	transcription start site region 53934	439 bp downstream
Tssr53935	transcription start site region 53935	490 bp downstream
Tssr53936	transcription start site region 53936	511 bp downstream
Tssr53937	transcription start site region 53937	601 bp downstream
Tssr53938	transcription start site region 53938	637 bp downstream
Tssr53939	transcription start site region 53939	691 bp downstream
Tssr53940	transcription start site region 53940	867 bp downstream
Tssr53941	transcription start site region 53941	907 bp downstream
Tssr53942	transcription start site region 53942	966 bp downstream
Tssr53943	transcription start site region 53943	1131 bp downstream
Tssr53944	transcription start site region 53944	1180 bp downstream
Tssr53945	transcription start site region 53945	1190 bp downstream
Tssr53946	transcription start site region 53946	1211 bp downstream
Tssr53947	transcription start site region 53947	1319 bp downstream