rs581620321 SNP Detail

Summary

• ID
  rs581620321
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:33452439 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACAA AAAACAAACA AACAAACAAA
  M
  AAACAAATCA TCAAACCAAA AACAA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C3H/HeH	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	ST/bJ	SWR/J
ss921240026	MGP_WTSI_12_33402440	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	A	C	C	C	C	A	C	C	C	C	A	C	A	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C3H/HeH	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	ST/bJ	SWR/J
rs581620321					SNP	C	C	C	C	C	C	C	C	C	A	C	C	C	C	A	C	C	C	C	A	C	A	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss921240026	MGP_WTSI_12_33402440	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:33452439 () rs orientation: forward

Symbol	Name	Function Class
Efcab10	EF-hand calcium binding domain 10	1173 bp downstream
Gm47506	predicted gene, 47506	within coordinates
Gm61262	predicted gene, 61262	within coordinates
Rr260275	regulatory region 260275	562 bp proximal
Rr267149	regulatory region 267149	962 bp proximal