rs581645112 SNP Detail

Summary

• ID
  rs581645112
• Variation Type
  SNP
• Alleles
  A/G/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:17587139 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAAT CTCACTTCTT TGTCGGGGGG
  D
  GGGGGGGTGT GGGGGGGGGC TCCCA                                      
  
  D = A/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	C57BL/10SnJ	C57BR/cdJ	CAST/EiJ	CE/J	CZECHII/EiJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi5/Ianm	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss919157217	MGP_WTSI_8_17537123	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	C57BL/10SnJ	C57BR/cdJ	CAST/EiJ	CE/J	CZECHII/EiJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi5/Ianm	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs581645112					SNP	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss919157217	MGP_WTSI_8_17537123	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:17587139 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20134	CpG island 20134	1289 bp distal
Csmd1	CUB and Sushi multiple domains 1	1537 bp upstream
Gm63936	predicted gene, 63936	within coordinates
Rr660279	regulatory region 660279	1853 bp distal
Rr660280	regulatory region 660280	1352 bp distal
Rr660281	regulatory region 660281	408 bp proximal
Rr660282	regulatory region 660282	611 bp proximal
Tssr80518	transcription start site region 80518	1926 bp upstream
Tssr80519	transcription start site region 80519	1904 bp upstream
Tssr80520	transcription start site region 80520	1883 bp upstream
Tssr80521	transcription start site region 80521	1733 bp upstream
Tssr80522	transcription start site region 80522	1491 bp upstream
Tssr80523	transcription start site region 80523	1478 bp upstream
Tssr80524	transcription start site region 80524	1446 bp upstream