rs581672121 SNP Detail

Summary

• ID
  rs581672121
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47016979 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTTA AAAGAAAGAA AAAAAAAAGA
  C
  AAAAAAAAAA AAAAAAAAAA ACCTA                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	MA/MyJ	NZB/BlNJ	NZO/HlLtJ	PL/J	RF/J	RIIIS/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss923589218	MGP_WTSI_17_46706053	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	MA/MyJ	NZB/BlNJ	NZO/HlLtJ	PL/J	RF/J	RIIIS/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs581672121					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss923589218	MGP_WTSI_17_46706053	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47016979 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9240	CpG island 9240	682 bp distal
Gm65134	predicted gene, 65134	within coordinates
Ppp2r5d	protein phosphatase 2, regulatory subunit B', delta	1027 bp upstream
Rr331602	regulatory region 331602	422 bp proximal
Rr339921	regulatory region 339921	within coordinates
Rr370260	regulatory region 370260	807 bp downstream
Tssr148375	transcription start site region 148375	1053 bp upstream
Tssr148376	transcription start site region 148376	1040 bp upstream