rs581702354 SNP Detail

Summary

• ID
  rs581702354
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:88824641 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGAT TGGTTGTGGC GGGGGTGGGG
  T
  TAGGAGGCAT CTCTGTGACT GGGTA                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	DBA/1J	I/LnJ	LG/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SWR/J	ZALENDE/EiJ
ss917551556	MGP_WTSI_5_88676782	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	DBA/1J	I/LnJ	LG/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SWR/J	ZALENDE/EiJ
rs581702354					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917551556	MGP_WTSI_5_88676782	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:88824641 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16030	CpG island 16030	292 bp distal
Gm71600	predicted gene, 71600	within coordinates
Grsf1	G-rich RNA sequence binding factor 1	611 bp upstream
Rr378262	regulatory region 378262	1156 bp upstream
Rr614150	regulatory region 614150	1127 bp distal
Rr614151	regulatory region 614151	626 bp distal
Rr614152	regulatory region 614152	804 bp distal
Rr614153	regulatory region 614153	743 bp distal
Rr614154	regulatory region 614154	549 bp distal
Rr614155	regulatory region 614155	within coordinates
Rr614156	regulatory region 614156	1997 bp proximal
Tssr51689	transcription start site region 51689	1555 bp upstream
Tssr51690	transcription start site region 51690	1219 bp upstream
Tssr51691	transcription start site region 51691	1190 bp upstream
Tssr51692	transcription start site region 51692	1127 bp upstream
Tssr51693	transcription start site region 51693	653 bp upstream
Tssr51694	transcription start site region 51694	596 bp upstream
Tssr51695	transcription start site region 51695	573 bp upstream
Tssr51696	transcription start site region 51696	545 bp upstream