rs581717923 SNP Detail

Summary

• ID
  rs581717923
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:94390431 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCTC CCCTGGTGCG TCGTGCGCGC
  R
  CGCGCGCGCG CGCACACACA CACAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	DBA/2J	I/LnJ	KK/HlJ	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss916295312	MGP_WTSI_3_94483124	EVA_MGPV3	EVA_MGPV3	f	SNP	G	A	G	G	G	G	G	G	G	G	A	A	A	A	A	G	G	A	G	G	G	G	A	A	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	DBA/2J	I/LnJ	KK/HlJ	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs581717923					SNP	G	A	G	G	G	G	G	G	G	G	A	A	A	A	A	G	G	A	G	G	G	G	A	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss916295312	MGP_WTSI_3_94483124	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:94390431 () rs orientation: forward

Symbol	Name	Function Class
Celf3	CUGBP, Elav-like family member 3	within coordinates
Cpgi13484	CpG island 13484	820 bp proximal
D3Umi4	DNA segment, Chr 3, University of Michigan 4	1950 bp proximal
Gm65215	predicted gene, 65215	216 bp downstream
Gm65218	predicted gene, 65218	1306 bp downstream
Rr580638	regulatory region 580638	9 bp distal
Rr580639	regulatory region 580639	184 bp proximal
Rr580640	regulatory region 580640	1085 bp proximal
Rr580641	regulatory region 580641	1838 bp proximal
Tssr30454	transcription start site region 30454	1200 bp upstream
Tssr30455	transcription start site region 30455	1214 bp upstream
Tssr30456	transcription start site region 30456	1245 bp upstream
Tssr34391	transcription start site region 34391	1091 bp downstream