rs581727624 SNP Detail

Summary

• ID
  rs581727624
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127583947 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCTC CCTCCCTCCC TCTCCCTCTC
  Y
  CTCGCTCTCG CTCTCTCTCT CCTTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss916424222	MGP_WTSI_3_127790298	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs581727624					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss916424222	MGP_WTSI_3_127790298	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127583947 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13800	CpG island 13800	170 bp distal
Cpgi13801	CpG island 13801	340 bp proximal
Gm56817	predicted gene, 56817	41 bp upstream
Gm65225	predicted gene, 65225	95 bp downstream
Rr584859	regulatory region 584859	1984 bp distal
Rr584860	regulatory region 584860	376 bp distal
Rr584861	regulatory region 584861	479 bp distal
Rr584862	regulatory region 584862	52 bp distal
Rr584863	regulatory region 584863	within coordinates
Rr584864	regulatory region 584864	517 bp proximal
Tifa	TRAF-interacting protein with forkhead-associated domain	within coordinates
Tssr31594	transcription start site region 31594	1096 bp downstream
Tssr31595	transcription start site region 31595	1084 bp downstream
Tssr31596	transcription start site region 31596	1051 bp downstream
Tssr31597	transcription start site region 31597	1011 bp downstream
Tssr31598	transcription start site region 31598	988 bp downstream
Tssr31599	transcription start site region 31599	489 bp downstream
Tssr31600	transcription start site region 31600	421 bp downstream
Tssr31601	transcription start site region 31601	369 bp downstream
Tssr31602	transcription start site region 31602	315 bp downstream
Tssr31603	transcription start site region 31603	297 bp downstream
Tssr31604	transcription start site region 31604	173 bp downstream
Tssr31605	transcription start site region 31605	304 bp upstream
Tssr31606	transcription start site region 31606	502 bp upstream
Tssr31607	transcription start site region 31607	740 bp upstream
Tssr31608	transcription start site region 31608	808 bp upstream
Tssr31609	transcription start site region 31609	859 bp upstream
Tssr31610	transcription start site region 31610	968 bp upstream
Tssr31611	transcription start site region 31611	1076 bp upstream
Tssr35598	transcription start site region 35598	540 bp upstream
Tssr35599	transcription start site region 35599	458 bp upstream
Tssr35600	transcription start site region 35600	430 bp upstream
Tssr35601	transcription start site region 35601	397 bp upstream
Tssr35602	transcription start site region 35602	80 bp upstream