rs581762012 SNP Detail

Summary

• ID
  rs581762012
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:32056320 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTC TTTTCTTTTC TTTTCTTTTC
  Y
  TTTCTTTTCT TTTTTTTTTC TTCTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	C57BL/6J	CAST/EiJ	CBA/J	LEWES/EiJ	LG/J	NZO/HlLtJ	PL/J	PWK/PhJ	RIIIS/J	SPRET/EiJ	SWR/J	ZALENDE/EiJ
ss915340114	MGP_WTSI_2_32166308	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	T	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	C57BL/6J	CAST/EiJ	CBA/J	LEWES/EiJ	LG/J	NZO/HlLtJ	PL/J	PWK/PhJ	RIIIS/J	SPRET/EiJ	SWR/J	ZALENDE/EiJ
rs581762012					SNP	C	C	C	C	C	C	C	C	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915340114	MGP_WTSI_2_32166308	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:32056320 () rs orientation: forward

Symbol	Name	Function Class
Prrc2b	proline-rich coiled-coil 2B	Intron
Rr367164	regulatory region 367164	1639 bp upstream
Rr554831	regulatory region 554831	1393 bp distal
Rr554832	regulatory region 554832	574 bp distal
Rr554833	regulatory region 554833	196 bp proximal
Rr554834	regulatory region 554834	1408 bp proximal
Rr554835	regulatory region 554835	1799 bp proximal
Tssr23465	transcription start site region 23465	1622 bp downstream