rs581779876 SNP Detail

Summary

• ID
  rs581779876
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:77740056 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATATA TATATATTAT ATATATATAT
  M
  TATATATAGT TAGAAGTGGC TGTTG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/10J	C57BR/cdJ	C58/J	CZECHII/EiJ	DBA/1J	I/LnJ	JF1/MsJ	LEWES/EiJ	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SPRET/EiJ	ST/bJ	ZALENDE/EiJ
ss920485985	MGP_WTSI_10_77904222	EVA_MGPV3	EVA_MGPV3	f	SNP	C	A	A	C	A	A	A	A	C	A	A	C	C	C	A	C	A	A	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/10J	C57BR/cdJ	C58/J	CZECHII/EiJ	DBA/1J	I/LnJ	JF1/MsJ	LEWES/EiJ	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SPRET/EiJ	ST/bJ	ZALENDE/EiJ
rs581779876					SNP	C	A	A	C	A	A	A	A	C	A	A	C	C	C	A	C	A	A	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss920485985	MGP_WTSI_10_77904222	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:77740056 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1765	CpG island 1765	799 bp distal
Gm53590	predicted gene, 53590	within coordinates
Gm66732	predicted gene, 66732	within coordinates
Gm66819	predicted gene, 66819	823 bp downstream
Lrrc3	leucine rich repeat containing 3	1686 bp upstream
Rr434596	regulatory region 434596	1836 bp distal
Rr434597	regulatory region 434597	1697 bp distal
Rr434598	regulatory region 434598	715 bp distal
Rr434599	regulatory region 434599	451 bp distal
Tssr98252	transcription start site region 98252	1761 bp upstream
Tssr98253	transcription start site region 98253	1693 bp upstream