rs581796148 SNP Detail

Summary

• ID
  rs581796148
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:144940567 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAC TGGCACACAC ATACATGCAA
  R
  CATGGACACA CACACACACA CACAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	MOLF/EiJ	RIIIS/J	SPRET/EiJ
ss917130899	MGP_WTSI_4_145213997	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	MOLF/EiJ	RIIIS/J	SPRET/EiJ
rs581796148					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917130899	MGP_WTSI_4_145213997	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:144940567 () rs orientation: forward

Symbol	Name	Function Class
Rr87265	regulatory region 87265	234 bp proximal
Rr103536	regulatory region 103536	768 bp distal
Rr103537	regulatory region 103537	within coordinates
Tnfrsf1b	tumor necrosis factor receptor superfamily, member 1b	within coordinates
Tssr40194	transcription start site region 40194	27 bp downstream
Tssr40195	transcription start site region 40195	284 bp upstream
Tssr44484	transcription start site region 44484	1212 bp upstream
Tssr44485	transcription start site region 44485	1146 bp upstream
Tssr44486	transcription start site region 44486	324 bp upstream
Tssr44487	transcription start site region 44487	269 bp upstream
Tssr44488	transcription start site region 44488	152 bp upstream
Tssr44489	transcription start site region 44489	76 bp upstream
Tssr44490	transcription start site region 44490	201 bp downstream
Tssr44491	transcription start site region 44491	368 bp downstream
Tssr44492	transcription start site region 44492	593 bp downstream
Tssr44493	transcription start site region 44493	754 bp downstream
Tssr44494	transcription start site region 44494	988 bp downstream
Tssr44495	transcription start site region 44495	1049 bp downstream
Tssr44496	transcription start site region 44496	1118 bp downstream
Tssr44497	transcription start site region 44497	1241 bp downstream
Tssr44498	transcription start site region 44498	1366 bp downstream
Tssr44499	transcription start site region 44499	1409 bp downstream
Tssr44500	transcription start site region 44500	1497 bp downstream
Tssr44501	transcription start site region 44501	1557 bp downstream
Tssr44502	transcription start site region 44502	1653 bp downstream
Tssr44503	transcription start site region 44503	1769 bp downstream
Tssr44504	transcription start site region 44504	1835 bp downstream