rs581820913 SNP Detail

Summary

• ID
  rs581820913
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:69388191 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTTT GGAAGATTAA ATATATATAT
  R
  TATATATATA TATATATATG TATAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CE/J	DBA/1J	I/LnJ	LEWES/EiJ	MA/MyJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	SJL/J	SPRET/EiJ	ZALENDE/EiJ
ss924602426	MGP_WTSI_X_70344585	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CE/J	DBA/1J	I/LnJ	LEWES/EiJ	MA/MyJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	SJL/J	SPRET/EiJ	ZALENDE/EiJ
rs581820913					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss924602426	MGP_WTSI_X_70344585	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:69388191 () rs orientation: forward

Symbol	Name	Function Class
Ids	iduronate 2-sulfatase	mRNA-UTR
Tssr163512	transcription start site region 163512	300 bp upstream
Tssr163513	transcription start site region 163513	274 bp upstream
Tssr163514	transcription start site region 163514	208 bp upstream
Tssr163515	transcription start site region 163515	53 bp downstream
Tssr163516	transcription start site region 163516	272 bp downstream
Tssr163517	transcription start site region 163517	359 bp downstream
Tssr163518	transcription start site region 163518	667 bp downstream
Tssr163519	transcription start site region 163519	1569 bp downstream