rs581822905 SNP Detail

Summary

• ID
  rs581822905
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:29778868 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAGA AGGAGAAGGA GAAGGAGAAG
  R
  AGAAGGAGAA GAAGAAGAAG AAGAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	SEA/GnJ	SJL/J	SM/J	ST/bJ
ss915332801	MGP_WTSI_2_29888856	EVA_MGPV3	EVA_MGPV3	f	SNP	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	SEA/GnJ	SJL/J	SM/J	ST/bJ
rs581822905					SNP	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915332801	MGP_WTSI_2_29888856	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:29778868 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11418	CpG island 11418	132 bp proximal
Gm75149	predicted gene, 75149	within coordinates
Odf2	outer dense fiber of sperm tails 2	365 bp upstream
Rr396853	regulatory region 396853	719 bp upstream
Rr554171	regulatory region 554171	1920 bp distal
Rr554172	regulatory region 554172	1715 bp distal
Rr554173	regulatory region 554173	374 bp proximal
Rr554174	regulatory region 554174	1747 bp proximal
Rr554175	regulatory region 554175	1820 bp proximal
Tssr452	transcription start site region 452	853 bp upstream
Tssr453	transcription start site region 453	1132 bp upstream
Tssr454	transcription start site region 454	1149 bp upstream
Tssr455	transcription start site region 455	1182 bp upstream
Tssr456	transcription start site region 456	1254 bp upstream
Tssr17034	transcription start site region 17034	343 bp upstream
Tssr17035	transcription start site region 17035	361 bp upstream
Tssr17036	transcription start site region 17036	886 bp upstream
Tssr17037	transcription start site region 17037	946 bp upstream
Tssr17038	transcription start site region 17038	1210 bp upstream
Tssr17039	transcription start site region 17039	1240 bp upstream
Tssr17040	transcription start site region 17040	1590 bp upstream
Tssr17041	transcription start site region 17041	1664 bp upstream
Tssr17042	transcription start site region 17042	1678 bp upstream
Tssr17043	transcription start site region 17043	1699 bp upstream
Tssr17044	transcription start site region 17044	1842 bp upstream
Tssr23341	transcription start site region 23341	1478 bp downstream