rs581836691 SNP Detail

Summary

• ID
  rs581836691
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:117162120 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTCT CTCTCTCTCT CTCTCTCTCT
  M
  TCTCTCTCTC TCTCTCTCCT TCCCT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss922567480	MGP_WTSI_14_116924708	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	C	C	A	A	A	A	A	C	A	A	C	A	A	A	A	C	C	C	A	A	A	A	A	A	A	A	C	A	A	A	A	A	C	A	A	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs581836691					SNP	A	A	A	A	A	A	A	A	C	C	A	A	A	A	A	C	A	A	C	A	A	A	A	C	C	C	A	A	A	A	A	A	A	A	C	A	A	A	A	A	C	A	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss922567480	MGP_WTSI_14_116924708	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:117162120 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6842	CpG island 6842	461 bp proximal
Gpc6	glypican 6	607 bp upstream
Tssr127141	transcription start site region 127141	497 bp upstream
Tssr127142	transcription start site region 127142	551 bp upstream
Tssr127143	transcription start site region 127143	583 bp upstream
Tssr127144	transcription start site region 127144	671 bp upstream
Tssr127145	transcription start site region 127145	797 bp upstream
Tssr127146	transcription start site region 127146	808 bp upstream
Tssr127147	transcription start site region 127147	837 bp upstream
Tssr127148	transcription start site region 127148	850 bp upstream
Tssr127149	transcription start site region 127149	1064 bp upstream
Tssr127150	transcription start site region 127150	1095 bp upstream