rs581884568 SNP Detail

Summary

• ID
  rs581884568
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95800299 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCCT CCCATCCCCC CCACCCCCCC
  M
  CCTCCACTGA TTCCCCTCCT AGTGA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	SPRET/EiJ	SWR/J	ZALENDE/EiJ
ss916301781	MGP_WTSI_3_95892987	EVA_MGPV3	EVA_MGPV3	f	SNP	A	C	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	SPRET/EiJ	SWR/J	ZALENDE/EiJ
rs581884568					SNP	A	C	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss916301781	MGP_WTSI_3_95892987	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95800299 () rs orientation: forward

Symbol	Name	Function Class
Aph1a	aph1 homolog A, gamma secretase subunit	982 bp upstream
BC028528	cDNA sequence BC028528	982 bp upstream
Cpgi13526	CpG island 13526	714 bp proximal
Cpgi13527	CpG island 13527	1282 bp proximal
Rr78078	regulatory region 78078	98 bp distal
Rr78079	regulatory region 78079	101 bp proximal
Rr397845	regulatory region 397845	729 bp upstream
Tssr30653	transcription start site region 30653	933 bp upstream
Tssr30654	transcription start site region 30654	966 bp upstream
Tssr30655	transcription start site region 30655	1026 bp upstream
Tssr34557	transcription start site region 34557	1051 bp upstream
Tssr34558	transcription start site region 34558	1002 bp upstream
Tssr34559	transcription start site region 34559	142 bp upstream
Tssr34560	transcription start site region 34560	110 bp upstream