rs581884604 SNP Detail

Summary

• ID
  rs581884604
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:89815484 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCCC CTCCCCTCCC CTCCCCTCCC
  Y
  TCCCCTCCCC ATTATCTTTC TTTCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C57BL/6J	C57BL/10SnJ	LP/J	NZW/LacJ	SPRET/EiJ
ss918916179	MGP_WTSI_7_90166276	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C57BL/6J	C57BL/10SnJ	LP/J	NZW/LacJ	SPRET/EiJ
rs581884604					SNP	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss918916179	MGP_WTSI_7_90166276	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:89815484 () rs orientation: forward

Symbol	Name	Function Class
Picalm	phosphatidylinositol binding clathrin assembly protein	within coordinates
Tssr67723	transcription start site region 67723	728 bp downstream
Tssr67724	transcription start site region 67724	210 bp downstream
Tssr67725	transcription start site region 67725	168 bp downstream
Tssr67726	transcription start site region 67726	153 bp downstream
Tssr67727	transcription start site region 67727	89 bp downstream