rs581888689 SNP Detail

Summary

• ID
  rs581888689
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:145292629 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCGTC TACTCCTTTT GGGTGAATTT
  K
  CTTCCTTTAG TTCTAGAGCT TCTAG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	SPRET/EiJ
ss917132791	MGP_WTSI_4_145566059	EVA_MGPV3	EVA_MGPV3	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	SPRET/EiJ
rs581888689					SNP	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917132791	MGP_WTSI_4_145566059	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:145292629 () rs orientation: forward

Symbol	Name	Function Class
Gm70447	predicted gene, 70447	within coordinates
Rr97125	regulatory region 97125	1384 bp distal
Tssr40222	transcription start site region 40222	1413 bp downstream