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rs581893843 SNP Detail
Summary
  • ID
    rs581893843
  • Variation Type
    SNP
  • Alleles
    C
Genome Location and Flanking Sequence
  • Location
    Chr3:131315812 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          CTCCC CTCCCCTCCC CTCCCCTCCC
    C
    TCCCCCTCCT TCCACTTCTT TGGTG                                      
    
    C = C
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C57BL/6J
C57BL/10SnJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
KK/HlJ
MA/MyJ
NOD/ShiLtJ
NON/ShiLtJ
PL/J
QSi3/Ianm
QSi5/Ianm
RF/J
SJL/J
SWR/J
ss916438071 MGP_WTSI_3_131610051 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C57BL/6J
C57BL/10SnJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
KK/HlJ
MA/MyJ
NOD/ShiLtJ
NON/ShiLtJ
PL/J
QSi3/Ianm
QSi5/Ianm
RF/J
SJL/J
SWR/J
rs581893843 SNP C C C C C C C C C C C C C C C C C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss916438071 MGP_WTSI_3_131610051 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:131315812 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm42881 predicted gene 42881 386 bp downstream
Papss1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 within coordinates
Rr74408 regulatory region 74408 1596 bp distal
Rr74409 regulatory region 74409 31 bp distal
Rr79284 regulatory region 79284 589 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory