rs581896331 SNP Detail

Summary

• ID
  rs581896331
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:122580278 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCTT TCTTTCTTTC TTTCTTTCTT
  Y
  CTTCCTTCCT TCCTTCCTTC CTTTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	DBA/1J	FVB/NJ	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	PWK/PhJ	SJL/J	SM/J	ST/bJ	ZALENDE/EiJ
ss918334583	MGP_WTSI_6_122603319	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	DBA/1J	FVB/NJ	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	PWK/PhJ	SJL/J	SM/J	ST/bJ	ZALENDE/EiJ
rs581896331					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss918334583	MGP_WTSI_6_122603319	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:122580278 () rs orientation: forward

Symbol	Name	Function Class
Apobec1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	875 bp upstream
Rr399899	regulatory region 399899	807 bp downstream
Rr399900	regulatory region 399900	791 bp upstream
Rr638222	regulatory region 638222	959 bp distal
Rr638223	regulatory region 638223	385 bp distal
Rr638224	regulatory region 638224	1932 bp proximal
Tssr58686	transcription start site region 58686	614 bp downstream
Tssr62923	transcription start site region 62923	975 bp upstream
Tssr62924	transcription start site region 62924	919 bp upstream
Tssr62925	transcription start site region 62925	897 bp upstream
Tssr62926	transcription start site region 62926	207 bp upstream
Tssr62927	transcription start site region 62927	1057 bp downstream