rs581897098 SNP Detail

Summary

• ID
  rs581897098
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:22324975 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTGT CAGTGGCTGT GGTCTTCTAC
  R
  TTGCTTCTGC TTTCAGGACA TGCTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	DBA/1J	DBA/2J	JF1/MsJ	LEWES/EiJ	LG/J	MOLF/EiJ	NZB/BlNJ	NZW/LacJ	PWK/PhJ	RF/J	RIIIS/J	SEA/GnJ	SPRET/EiJ	ST/bJ
ss921205929	MGP_WTSI_12_22274974	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	DBA/1J	DBA/2J	JF1/MsJ	LEWES/EiJ	LG/J	MOLF/EiJ	NZB/BlNJ	NZW/LacJ	PWK/PhJ	RF/J	RIIIS/J	SEA/GnJ	SPRET/EiJ	ST/bJ
rs581897098					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss921205929	MGP_WTSI_12_22274974	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:22324975 () rs orientation: forward

Symbol	Name	Function Class
Gm10476	predicted gene 10476	within coordinates
Gm20486	predicted gene 20486	462 bp upstream
Rr463763	regulatory region 463763	137 bp distal