AGAAA AGAAAAGAAA GAAAAGAAAA A AAAGAAAAGA AAAGAAAGAA AAGAA A = A Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | AKR/J |
B10.RIII-H2 |
BTBR T<+> Itpr3 |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
JF1/MsJ |
MA/MyJ |
NZB/BlNJ |
NZO/HlLtJ |
RIIIS/J |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss917672996 | MGP_WTSI_5_122099856 | EVA_MGPV3 | EVA_MGPV3 | f | SNP | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A |
SNP Consensus Information | |||||||||||||||||||||||||||||||||
SNP | Consensus Type | AKR/J |
B10.RIII-H2 |
BTBR T<+> Itpr3 |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
JF1/MsJ |
MA/MyJ |
NZB/BlNJ |
NZO/HlLtJ |
RIIIS/J |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
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rs581901913 | SNP | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss917672996 | MGP_WTSI_5_122099856 | SC_MOUSE_GENOMES | SC_MOUSE_GENOMES | f | SNP | A/G |
Location: Chr5:122237919 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Gm57283 | predicted gene, 57283 | 1589 bp downstream | ||||||
Myl2 | myosin, light polypeptide 2, regulatory, cardiac, slow | 1095 bp upstream | ||||||
Rr124298 | regulatory region 124298 | 1081 bp proximal | ||||||
Rr407055 | regulatory region 407055 | 862 bp proximal | ||||||
Tssr48619 | transcription start site region 48619 | 928 bp upstream | ||||||
Tssr48620 | transcription start site region 48620 | 960 bp upstream | ||||||
Tssr48621 | transcription start site region 48621 | 1088 bp upstream | ||||||
Tssr48622 | transcription start site region 48622 | 1116 bp upstream | ||||||
Tssr48623 | transcription start site region 48623 | 1290 bp upstream | ||||||
Tssr48624 | transcription start site region 48624 | 1307 bp upstream | ||||||
Tssr48625 | transcription start site region 48625 | 1921 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/10/2024 MGI 6.24 |
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