rs581901913 SNP Detail

Summary

• ID
  rs581901913
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:122237919 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAAA AGAAAAGAAA GAAAAGAAAA
  A
  AAAGAAAAGA AAAGAAAGAA AAGAA                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	MA/MyJ	NZB/BlNJ	NZO/HlLtJ	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
ss917672996	MGP_WTSI_5_122099856	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	MA/MyJ	NZB/BlNJ	NZO/HlLtJ	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
rs581901913					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917672996	MGP_WTSI_5_122099856	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:122237919 () rs orientation: forward

Symbol	Name	Function Class
Gm57283	predicted gene, 57283	1589 bp downstream
Myl2	myosin, light polypeptide 2, regulatory, cardiac, slow	1095 bp upstream
Rr124298	regulatory region 124298	1081 bp proximal
Rr407055	regulatory region 407055	862 bp proximal
Tssr48619	transcription start site region 48619	928 bp upstream
Tssr48620	transcription start site region 48620	960 bp upstream
Tssr48621	transcription start site region 48621	1088 bp upstream
Tssr48622	transcription start site region 48622	1116 bp upstream
Tssr48623	transcription start site region 48623	1290 bp upstream
Tssr48624	transcription start site region 48624	1307 bp upstream
Tssr48625	transcription start site region 48625	1921 bp upstream