rs581934782 SNP Detail

Summary

• ID
  rs581934782
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130660271 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCCA TCCACCATCC ATCATCCATC
  T
  ATCCATCCAT CCATCCATCC ATCCA                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/2J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi5/Ianm	RF/J	ST/bJ	WSB/EiJ
ss917078121	MGP_WTSI_4_130932960	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/2J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi5/Ianm	RF/J	ST/bJ	WSB/EiJ
rs581934782					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917078121	MGP_WTSI_4_130932960	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130660271 () rs orientation: forward

Symbol	Name	Function Class
Laptm5	lysosomal-associated protein transmembrane 5	within coordinates
Tssr1315	transcription start site region 1315	828 bp downstream
Tssr39317	transcription start site region 39317	935 bp downstream
Tssr39318	transcription start site region 39318	816 bp downstream
Tssr39319	transcription start site region 39319	783 bp downstream
Tssr39320	transcription start site region 39320	721 bp downstream
Tssr39321	transcription start site region 39321	702 bp downstream
Tssr39322	transcription start site region 39322	649 bp downstream
Tssr39323	transcription start site region 39323	635 bp downstream
Tssr39324	transcription start site region 39324	604 bp downstream
Tssr39325	transcription start site region 39325	590 bp downstream
Tssr39326	transcription start site region 39326	569 bp downstream
Tssr39327	transcription start site region 39327	550 bp downstream
Tssr39328	transcription start site region 39328	524 bp downstream
Tssr39329	transcription start site region 39329	405 bp downstream
Tssr39330	transcription start site region 39330	348 bp downstream
Tssr39331	transcription start site region 39331	316 bp downstream
Tssr39332	transcription start site region 39332	1497 bp upstream
Tssr39333	transcription start site region 39333	1520 bp upstream
Tssr39334	transcription start site region 39334	1548 bp upstream
Tssr39335	transcription start site region 39335	1585 bp upstream
Tssr39336	transcription start site region 39336	1599 bp upstream
Tssr39337	transcription start site region 39337	1621 bp upstream
Tssr39338	transcription start site region 39338	1655 bp upstream
Tssr39339	transcription start site region 39339	1679 bp upstream
Tssr39340	transcription start site region 39340	1756 bp upstream
Tssr39341	transcription start site region 39341	1772 bp upstream
Tssr39342	transcription start site region 39342	1854 bp upstream
Tssr39343	transcription start site region 39343	1874 bp upstream
Tssr39344	transcription start site region 39344	1934 bp upstream
Tssr39345	transcription start site region 39345	1970 bp upstream
Tssr39346	transcription start site region 39346	1986 bp upstream
Tssr43605	transcription start site region 43605	1583 bp downstream
Tssr43606	transcription start site region 43606	1828 bp downstream