rs581965271 SNP Detail

Summary

• ID
  rs581965271
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:93350396 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACATA TTTTCTTTGC TTTTTAAAAA
  G
  ATTTATTTAT TTATTTTATA TGTGA                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss916289607	MGP_WTSI_3_93443089	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs581965271					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss916289607	MGP_WTSI_3_93443089	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:93350396 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13475	CpG island 13475	436 bp proximal
Gm37245	predicted gene, 37245	within coordinates
Gm56800	predicted gene, 56800	within coordinates
Gm66249	predicted gene, 66249	within coordinates
Tchh	trichohyalin	within coordinates
Tssr960	transcription start site region 960	338 bp upstream
Tssr961	transcription start site region 961	914 bp upstream
Tssr30345	transcription start site region 30345	700 bp downstream
Tssr30346	transcription start site region 30346	675 bp downstream
Tssr30347	transcription start site region 30347	362 bp upstream
Tssr30348	transcription start site region 30348	401 bp upstream
Tssr30349	transcription start site region 30349	407 bp upstream
Tssr30350	transcription start site region 30350	449 bp upstream
Tssr30351	transcription start site region 30351	480 bp upstream
Tssr30352	transcription start site region 30352	529 bp upstream
Tssr30353	transcription start site region 30353	541 bp upstream
Tssr30354	transcription start site region 30354	559 bp upstream
Tssr30355	transcription start site region 30355	578 bp upstream
Tssr30356	transcription start site region 30356	591 bp upstream
Tssr30357	transcription start site region 30357	689 bp upstream
Tssr30358	transcription start site region 30358	804 bp upstream
Tssr30359	transcription start site region 30359	833 bp upstream
Tssr30360	transcription start site region 30360	863 bp upstream
Tssr30361	transcription start site region 30361	1188 bp upstream
Tssr30362	transcription start site region 30362	1202 bp upstream
Tssr30363	transcription start site region 30363	1345 bp upstream
Tssr30364	transcription start site region 30364	1416 bp upstream
Tssr30365	transcription start site region 30365	1451 bp upstream
Tssr30366	transcription start site region 30366	1503 bp upstream
Tssr30367	transcription start site region 30367	1547 bp upstream
Tssr30368	transcription start site region 30368	1564 bp upstream
Tssr30369	transcription start site region 30369	1577 bp upstream
Tssr30370	transcription start site region 30370	1584 bp upstream
Tssr30371	transcription start site region 30371	1604 bp upstream
Tssr30372	transcription start site region 30372	1617 bp upstream
Tssr30373	transcription start site region 30373	1668 bp upstream
Tssr30374	transcription start site region 30374	1686 bp upstream
Tssr30375	transcription start site region 30375	1699 bp upstream
Tssr30376	transcription start site region 30376	1725 bp upstream
Tssr30377	transcription start site region 30377	1747 bp upstream
Tssr30378	transcription start site region 30378	1780 bp upstream
Tssr30379	transcription start site region 30379	1798 bp upstream
Tssr30380	transcription start site region 30380	1878 bp upstream
Tssr30381	transcription start site region 30381	1896 bp upstream
Tssr30382	transcription start site region 30382	1955 bp upstream
Tssr30383	transcription start site region 30383	1966 bp upstream
Tssr30384	transcription start site region 30384	1975 bp upstream
Tssr30385	transcription start site region 30385	1991 bp upstream
Tssr34352	transcription start site region 34352	775 bp downstream
Tssr34353	transcription start site region 34353	796 bp downstream
Tssr34354	transcription start site region 34354	806 bp downstream
Tssr34355	transcription start site region 34355	944 bp downstream
Tssr34356	transcription start site region 34356	1616 bp downstream
Tssr34357	transcription start site region 34357	1661 bp downstream
Tssr34358	transcription start site region 34358	1713 bp downstream
Tssr34359	transcription start site region 34359	1782 bp downstream
Tssr34360	transcription start site region 34360	1863 bp downstream
Tssr34361	transcription start site region 34361	1884 bp downstream
Tssr34362	transcription start site region 34362	1933 bp downstream
Tssr34363	transcription start site region 34363	1960 bp downstream
Tssr34364	transcription start site region 34364	1977 bp downstream
Tssr34365	transcription start site region 34365	1991 bp downstream