rs581976597 SNP Detail

Summary

• ID
  rs581976597
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19429736 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCAC AACCATCTGT AATGGGACCT
  S
  ACGCCTGAAG ACAGCTGCAG TGTAC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss918579987	MGP_WTSI_7_19695811	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs581976597					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss918579987	MGP_WTSI_7_19695811	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19429736 () rs orientation: forward

Symbol	Name	Function Class
Apoe	apolipoprotein E	298 bp downstream
Cpgi18507	CpG island 18507	710 bp proximal
D7Mit57	DNA segment, Chr 7, Massachusetts Institute of Technology 57	1960 bp proximal
Gm71725	predicted gene, 71725	1307 bp upstream
Rr155346	regulatory region 155346	265 bp proximal
Rr167194	regulatory region 167194	664 bp proximal
Tssr2112	transcription start site region 2112	640 bp upstream
Tssr2113	transcription start site region 2113	665 bp upstream
Tssr2114	transcription start site region 2114	780 bp upstream
Tssr2115	transcription start site region 2115	816 bp upstream
Tssr2116	transcription start site region 2116	891 bp upstream
Tssr2117	transcription start site region 2117	913 bp upstream
Tssr2118	transcription start site region 2118	1020 bp upstream
Tssr2119	transcription start site region 2119	1029 bp downstream
Tssr2120	transcription start site region 2120	1092 bp upstream
Tssr2121	transcription start site region 2121	1124 bp upstream
Tssr2122	transcription start site region 2122	1844 bp downstream
Tssr64880	transcription start site region 64880	457 bp upstream
Tssr64881	transcription start site region 64881	509 bp upstream
Tssr64882	transcription start site region 64882	553 bp upstream
Tssr64883	transcription start site region 64883	591 bp upstream
Tssr64884	transcription start site region 64884	618 bp upstream
Tssr64885	transcription start site region 64885	697 bp upstream
Tssr64886	transcription start site region 64886	718 bp upstream
Tssr64887	transcription start site region 64887	750 bp upstream
Tssr64888	transcription start site region 64888	969 bp upstream
Tssr64889	transcription start site region 64889	1063 bp upstream
Tssr64890	transcription start site region 64890	1109 bp upstream
Tssr64891	transcription start site region 64891	1132 bp upstream
Tssr64892	transcription start site region 64892	1165 bp upstream
Tssr64893	transcription start site region 64893	1200 bp upstream
Tssr64894	transcription start site region 64894	1654 bp upstream
Tssr64895	transcription start site region 64895	1750 bp upstream
Tssr64896	transcription start site region 64896	1776 bp upstream
Tssr70973	transcription start site region 70973	481 bp downstream
Tssr70974	transcription start site region 70974	527 bp downstream
Tssr70975	transcription start site region 70975	555 bp downstream
Tssr70976	transcription start site region 70976	590 bp downstream
Tssr70977	transcription start site region 70977	638 bp downstream
Tssr70978	transcription start site region 70978	653 bp downstream
Tssr70979	transcription start site region 70979	677 bp downstream
Tssr70980	transcription start site region 70980	687 bp downstream
Tssr70981	transcription start site region 70981	708 bp downstream
Tssr70982	transcription start site region 70982	722 bp downstream
Tssr70983	transcription start site region 70983	755 bp downstream
Tssr70984	transcription start site region 70984	772 bp downstream
Tssr70985	transcription start site region 70985	837 bp downstream
Tssr70986	transcription start site region 70986	870 bp downstream
Tssr70987	transcription start site region 70987	900 bp downstream
Tssr70988	transcription start site region 70988	944 bp downstream
Tssr70989	transcription start site region 70989	983 bp downstream
Tssr70990	transcription start site region 70990	995 bp downstream
Tssr70991	transcription start site region 70991	1040 bp downstream
Tssr70992	transcription start site region 70992	1048 bp downstream
Tssr70993	transcription start site region 70993	1057 bp downstream
Tssr70994	transcription start site region 70994	1098 bp downstream
Tssr70995	transcription start site region 70995	1103 bp downstream
Tssr70996	transcription start site region 70996	1136 bp downstream
Tssr70997	transcription start site region 70997	1170 bp downstream
Tssr70998	transcription start site region 70998	1232 bp downstream
Tssr70999	transcription start site region 70999	1250 bp downstream
Tssr71000	transcription start site region 71000	1693 bp downstream
Tssr71001	transcription start site region 71001	1723 bp downstream
Tssr71002	transcription start site region 71002	1783 bp downstream
Tssr71003	transcription start site region 71003	1801 bp downstream
Tssr71004	transcription start site region 71004	1829 bp downstream