rs582044016 SNP Detail

Summary

• ID
  rs582044016
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:40904929 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGCCT CCGCCGCCGC CACCACCACC
  R
  CCGCCGCTGC CGCCGCCAGC ACCGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss916054909	MGP_WTSI_3_40950494	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs582044016					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss916054909	MGP_WTSI_3_40950494	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:40904929 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13115	CpG island 13115	within coordinates
Gm64655	predicted gene, 64655	969 bp upstream
Larp1b	La ribonucleoprotein 1B	within coordinates
Rr397652	regulatory region 397652	681 bp downstream
Rr575871	regulatory region 575871	980 bp distal
Rr575872	regulatory region 575872	656 bp distal
Rr575873	regulatory region 575873	419 bp distal
Rr575874	regulatory region 575874	within coordinates
Rr575875	regulatory region 575875	309 bp proximal
Rr575876	regulatory region 575876	1062 bp proximal
Tssr28976	transcription start site region 28976	680 bp downstream
Tssr28977	transcription start site region 28977	642 bp downstream
Tssr28978	transcription start site region 28978	554 bp downstream
Tssr28979	transcription start site region 28979	538 bp downstream
Tssr28980	transcription start site region 28980	526 bp downstream
Tssr28981	transcription start site region 28981	76 bp downstream
Tssr28982	transcription start site region 28982	144 bp upstream
Tssr28983	transcription start site region 28983	285 bp upstream