rs582057511 SNP Detail

Summary

• ID
  rs582057511
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:31081155 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTCT ATATTAAGAG AGAGAGGAGG
  R
  GAGAGGAGGG GAGGGGAGGG GAGGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	FVB/NJ	I/LnJ	LG/J	LP/J	NOD/ShiLtJ	NON/ShiLtJ	PWK/PhJ	QSi3/Ianm	RF/J	SEA/GnJ	SM/J	SWR/J
ss919751082	MGP_WTSI_9_31169859	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	FVB/NJ	I/LnJ	LG/J	LP/J	NOD/ShiLtJ	NON/ShiLtJ	PWK/PhJ	QSi3/Ianm	RF/J	SEA/GnJ	SM/J	SWR/J
rs582057511					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss919751082	MGP_WTSI_9_31169859	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:31081155 () rs orientation: forward

Symbol	Name	Function Class
Aplp2	amyloid beta precursor-like protein 2	within coordinates
Rr675959	regulatory region 675959	1173 bp distal
Tssr88636	transcription start site region 88636	1051 bp upstream
Tssr88637	transcription start site region 88637	1017 bp upstream
Tssr88638	transcription start site region 88638	940 bp upstream
Tssr88639	transcription start site region 88639	661 bp downstream
Tssr88640	transcription start site region 88640	672 bp downstream
Tssr88641	transcription start site region 88641	684 bp downstream
Tssr88642	transcription start site region 88642	709 bp downstream
Tssr88643	transcription start site region 88643	748 bp downstream