rs582111222 SNP Detail

Summary

• ID
  rs582111222
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:4271341 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAACT AACTAGTACA CATGTTTTGG
  Y
  CATGGTGTGT CATAAGGAAC TAACT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	C57BL/10J	CAST/EiJ	JF1/MsJ	NON/ShiLtJ	NZB/BlNJ	PWK/PhJ	SJL/J	SM/J	WSB/EiJ
ss921127289	MGP_WTSI_12_4221341	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	C57BL/10J	CAST/EiJ	JF1/MsJ	NON/ShiLtJ	NZB/BlNJ	PWK/PhJ	SJL/J	SM/J	WSB/EiJ
rs582111222					SNP	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss921127289	MGP_WTSI_12_4221341	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:4271341 () rs orientation: forward

Symbol	Name	Function Class
Cenpo	centromere protein O	within coordinates
Gm48210	predicted gene, 48210	761 bp upstream