rs582135930 SNP Detail

Summary

• ID
  rs582135930
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46142725 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGTG TGTGTGTGTG TGAGTGTGTG
  T
  GTGTGTGAGT GTGTGTGTGT GTGTT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LEWES/EiJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss919808892	MGP_WTSI_9_46231427	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LEWES/EiJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs582135930					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss919808892	MGP_WTSI_9_46231427	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46142725 () rs orientation: forward

Symbol	Name	Function Class
Apoa1	apolipoprotein A-I	958 bp downstream
Apoc3	apolipoprotein C-III	1623 bp downstream
Cpgi21701	CpG island 21701	922 bp distal
D9Mit93	DNA segment, Chr 9, Massachusetts Institute of Technology 93	1928 bp proximal
Rr195183	regulatory region 195183	1725 bp distal
Rr206362	regulatory region 206362	324 bp distal
Tssr84847	transcription start site region 84847	1519 bp downstream
Tssr84848	transcription start site region 84848	1441 bp downstream
Tssr84849	transcription start site region 84849	1405 bp downstream
Tssr84850	transcription start site region 84850	1363 bp downstream
Tssr84851	transcription start site region 84851	1328 bp downstream
Tssr84852	transcription start site region 84852	1231 bp downstream
Tssr84853	transcription start site region 84853	1197 bp downstream
Tssr84854	transcription start site region 84854	1184 bp downstream
Tssr84855	transcription start site region 84855	1164 bp downstream
Tssr84856	transcription start site region 84856	1153 bp downstream
Tssr84857	transcription start site region 84857	1031 bp downstream
Tssr84858	transcription start site region 84858	994 bp downstream
Tssr84859	transcription start site region 84859	1705 bp upstream
Tssr84860	transcription start site region 84860	1844 bp upstream
Tssr84861	transcription start site region 84861	1890 bp upstream
Tssr89313	transcription start site region 89313	1452 bp upstream
Tssr89314	transcription start site region 89314	1424 bp upstream
Tssr89315	transcription start site region 89315	1401 bp upstream
Tssr89316	transcription start site region 89316	1381 bp upstream
Tssr89317	transcription start site region 89317	1372 bp upstream
Tssr89318	transcription start site region 89318	1348 bp upstream
Tssr89319	transcription start site region 89319	1338 bp upstream
Tssr89320	transcription start site region 89320	1325 bp upstream
Tssr89321	transcription start site region 89321	1300 bp upstream
Tssr89322	transcription start site region 89322	1217 bp upstream
Tssr89323	transcription start site region 89323	1165 bp upstream
Tssr89324	transcription start site region 89324	1137 bp upstream
Tssr89325	transcription start site region 89325	1112 bp upstream
Tssr89326	transcription start site region 89326	1078 bp upstream
Tssr89327	transcription start site region 89327	964 bp upstream
Tssr89328	transcription start site region 89328	1672 bp downstream
Tssr89329	transcription start site region 89329	1743 bp downstream
Tssr89330	transcription start site region 89330	1789 bp downstream
Tssr89331	transcription start site region 89331	1822 bp downstream
Tssr89332	transcription start site region 89332	1897 bp downstream