rs582194372 SNP Detail

Summary

• ID
  rs582194372
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:15728841 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCATG TGTTTTCATA ACTTGTTTTC
  S
  AATCTCTGCC CTGTAGAAAC CCAGA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BALB/cJ	BUB/BnJ	C57BL/6J	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	LEWES/EiJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	SEA/GnJ	SM/J	ZALENDE/EiJ
ss917237322	MGP_WTSI_5_15523843	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	C	G	G	G	C	G	G	C	G	G	G	G	G	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BALB/cJ	BUB/BnJ	C57BL/6J	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	LEWES/EiJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	SEA/GnJ	SM/J	ZALENDE/EiJ
rs582194372					SNP	G	G	G	G	G	G	G	G	G	C	G	G	G	C	G	G	C	G	G	G	G	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917237322	MGP_WTSI_5_15523843	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:15728841 () rs orientation: forward

Symbol	Name	Function Class
Gm21190	predicted gene, 21190	613 bp downstream
Gm21847	predicted gene, 21847	within coordinates
Rr607454	regulatory region 607454	1058 bp distal
Rr607455	regulatory region 607455	1171 bp distal