rs582293557 SNP Detail

Summary

• ID
  rs582293557
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:74801439 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGTG GGCATGACTG AAAGCAGCTG
  C
  CAGGAATCAT CAAACAAAAG CAAGG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CBA/J	CE/J	DBA/1J	FVB/NJ	LG/J	MA/MyJ	NZO/HlLtJ	NZW/LacJ	SEA/GnJ	SJL/J	SM/J	SWR/J
ss924624845	MGP_WTSI_X_75757833	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CBA/J	CE/J	DBA/1J	FVB/NJ	LG/J	MA/MyJ	NZO/HlLtJ	NZW/LacJ	SEA/GnJ	SJL/J	SM/J	SWR/J
rs582293557					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss924624845	MGP_WTSI_X_75757833	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:74801439 () rs orientation: forward

Symbol	Name	Function Class
4933407K13Rik	RIKEN cDNA 4933407K13 gene	within coordinates
Rr4698	regulatory region 4698	562 bp proximal
Rr4699	regulatory region 4699	1362 bp proximal
Rr8776	regulatory region 8776	161 bp proximal
Rr8777	regulatory region 8777	1161 bp proximal