rs582329578 SNP Detail

Summary

• ID
  rs582329578
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19428696 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCATG AAGTGTGGCT GTCTAGGGCC
  Y
  TGTCACTAGC CCACCGACCC ATCTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss918579984	MGP_WTSI_7_19694771	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs582329578					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss918579984	MGP_WTSI_7_19694771	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19428696 () rs orientation: forward

Symbol	Name	Function Class
Apoe	apolipoprotein E	1338 bp downstream
Cpgi18507	CpG island 18507	1750 bp proximal
Rr643238	regulatory region 643238	1621 bp distal
Rr643239	regulatory region 643239	within coordinates
Rr643240	regulatory region 643240	1680 bp proximal
Rr643241	regulatory region 643241	1865 bp proximal
Tssr2112	transcription start site region 2112	1680 bp upstream
Tssr2113	transcription start site region 2113	1705 bp upstream
Tssr2114	transcription start site region 2114	1820 bp upstream
Tssr2115	transcription start site region 2115	1856 bp upstream
Tssr2116	transcription start site region 2116	1931 bp upstream
Tssr2117	transcription start site region 2117	1953 bp upstream
Tssr64880	transcription start site region 64880	1497 bp upstream
Tssr64881	transcription start site region 64881	1549 bp upstream
Tssr64882	transcription start site region 64882	1593 bp upstream
Tssr64883	transcription start site region 64883	1631 bp upstream
Tssr64884	transcription start site region 64884	1658 bp upstream
Tssr64885	transcription start site region 64885	1737 bp upstream
Tssr64886	transcription start site region 64886	1758 bp upstream
Tssr64887	transcription start site region 64887	1790 bp upstream
Tssr70972	transcription start site region 70972	1860 bp upstream
Tssr70973	transcription start site region 70973	1521 bp downstream
Tssr70974	transcription start site region 70974	1567 bp downstream
Tssr70975	transcription start site region 70975	1595 bp downstream
Tssr70976	transcription start site region 70976	1630 bp downstream
Tssr70977	transcription start site region 70977	1678 bp downstream
Tssr70978	transcription start site region 70978	1693 bp downstream
Tssr70979	transcription start site region 70979	1717 bp downstream
Tssr70980	transcription start site region 70980	1727 bp downstream
Tssr70981	transcription start site region 70981	1748 bp downstream
Tssr70982	transcription start site region 70982	1762 bp downstream
Tssr70983	transcription start site region 70983	1795 bp downstream
Tssr70984	transcription start site region 70984	1812 bp downstream
Tssr70985	transcription start site region 70985	1877 bp downstream
Tssr70986	transcription start site region 70986	1910 bp downstream
Tssr70987	transcription start site region 70987	1940 bp downstream
Tssr70988	transcription start site region 70988	1984 bp downstream