rs582395612 SNP Detail

Summary

• ID
  rs582395612
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:61212887 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGAC ATATGATTCT TCTAGTACTA
  C
  TGACTATCGA ACTTTGATCA TGAAG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss924355637	MGP_WTSI_19_61224449	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs582395612					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss924355637	MGP_WTSI_19_61224449	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:61212887 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11146	CpG island 11146			462 bp proximal
Csf2ra	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)			mRNA-UTR
				Noncoding-Transcript-Variant
Gm56644	predicted gene, 56644			within coordinates
Rr406075	regulatory region 406075			within coordinates
Rr406076	regulatory region 406076			1483 bp upstream
Rr550838	regulatory region 550838			257 bp distal
Rr550839	regulatory region 550839			308 bp distal
Tssr157374	transcription start site region 157374			9 bp downstream
Tssr157375	transcription start site region 157375			22 bp upstream
Tssr157376	transcription start site region 157376			64 bp upstream
Tssr157377	transcription start site region 157377			103 bp upstream
Tssr157378	transcription start site region 157378			224 bp upstream
Tssr157379	transcription start site region 157379			257 bp upstream
Tssr160090	transcription start site region 160090			138 bp downstream
Tssr160091	transcription start site region 160091			160 bp downstream
Tssr160092	transcription start site region 160092			287 bp downstream
Tssr160093	transcription start site region 160093			389 bp downstream
Tssr160094	transcription start site region 160094			452 bp downstream
Tssr160095	transcription start site region 160095			538 bp downstream
Tssr160096	transcription start site region 160096			959 bp downstream
Tssr160097	transcription start site region 160097			1150 bp downstream
Tssr160098	transcription start site region 160098			1627 bp downstream
Tssr160099	transcription start site region 160099			1835 bp downstream
Tssr160100	transcription start site region 160100			1888 bp downstream