rs582434214 SNP Detail

Summary

• ID
  rs582434214
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149980547 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGAT TTCAGTCATC TTATATATTA
  S
  AGAAGTTAAT ATTCAGACTT GTTTA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss925260873	MGP_WTSI_1_150104796_mm38	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs582434214					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss925260873	MGP_WTSI_1_150104796_mm38	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149980547 () rs orientation: forward

Symbol	Name	Function Class
Ptgs2	prostaglandin-endoperoxide synthase 2	within coordinates
Tssr242	transcription start site region 242	1991 bp downstream
Tssr9239	transcription start site region 9239	1969 bp downstream
Tssr9240	transcription start site region 9240	1955 bp downstream
Tssr9241	transcription start site region 9241	1925 bp downstream
Tssr9242	transcription start site region 9242	1909 bp downstream
Tssr9243	transcription start site region 9243	1782 bp downstream
Tssr9244	transcription start site region 9244	1731 bp downstream
Tssr9245	transcription start site region 9245	1695 bp downstream
Tssr9246	transcription start site region 9246	1676 bp downstream
Tssr9247	transcription start site region 9247	1541 bp downstream
Tssr9248	transcription start site region 9248	1108 bp downstream
Tssr9249	transcription start site region 9249	1094 bp downstream
Tssr9250	transcription start site region 9250	893 bp downstream
Tssr9251	transcription start site region 9251	841 bp downstream
Tssr9252	transcription start site region 9252	806 bp downstream
Tssr9253	transcription start site region 9253	781 bp downstream
Tssr9254	transcription start site region 9254	765 bp downstream
Tssr9255	transcription start site region 9255	714 bp downstream
Tssr9256	transcription start site region 9256	509 bp downstream
Tssr9257	transcription start site region 9257	475 bp downstream
Tssr9258	transcription start site region 9258	459 bp downstream
Tssr9259	transcription start site region 9259	402 bp downstream
Tssr9260	transcription start site region 9260	350 bp downstream
Tssr9261	transcription start site region 9261	331 bp downstream
Tssr9262	transcription start site region 9262	310 bp downstream
Tssr9263	transcription start site region 9263	298 bp downstream
Tssr9264	transcription start site region 9264	249 bp downstream
Tssr9265	transcription start site region 9265	222 bp downstream
Tssr9266	transcription start site region 9266	133 bp downstream
Tssr9267	transcription start site region 9267	149 bp upstream
Tssr9268	transcription start site region 9268	205 bp upstream
Tssr9269	transcription start site region 9269	588 bp upstream
Tssr9270	transcription start site region 9270	628 bp upstream
Tssr9271	transcription start site region 9271	652 bp upstream
Tssr9272	transcription start site region 9272	682 bp upstream
Tssr9273	transcription start site region 9273	734 bp upstream
Tssr9274	transcription start site region 9274	752 bp upstream
Tssr9275	transcription start site region 9275	779 bp upstream
Tssr9276	transcription start site region 9276	794 bp upstream
Tssr9277	transcription start site region 9277	844 bp upstream
Tssr9278	transcription start site region 9278	865 bp upstream
Tssr9279	transcription start site region 9279	886 bp upstream
Tssr9280	transcription start site region 9280	903 bp upstream
Tssr9281	transcription start site region 9281	1009 bp upstream
Tssr9282	transcription start site region 9282	1044 bp upstream
Tssr9283	transcription start site region 9283	1058 bp upstream
Tssr9284	transcription start site region 9284	1073 bp upstream
Tssr9285	transcription start site region 9285	1083 bp upstream
Tssr9286	transcription start site region 9286	1167 bp upstream
Tssr9287	transcription start site region 9287	1680 bp upstream
Tssr9288	transcription start site region 9288	1796 bp upstream
Tssr9289	transcription start site region 9289	1813 bp upstream
Tssr9290	transcription start site region 9290	1969 bp upstream