rs582442426 SNP Detail

Summary

• ID
  rs582442426
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117114837 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGACC TGAATTCTCC TCTTAAAGAG
  M
  GAATAACATT ATGGTAGCAA TATTC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss920637008	MGP_WTSI_10_117278932	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs582442426					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss920637008	MGP_WTSI_10_117278932	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117114837 () rs orientation: forward

Symbol	Name	Function Class
Gm67237	predicted gene, 67237	100 bp downstream
Lyz2	lysozyme 2	within coordinates
Tssr95904	transcription start site region 95904	1592 bp downstream
Tssr95905	transcription start site region 95905	1524 bp downstream
Tssr95906	transcription start site region 95906	1470 bp downstream
Tssr95907	transcription start site region 95907	1437 bp downstream
Tssr95908	transcription start site region 95908	1256 bp downstream
Tssr95909	transcription start site region 95909	1166 bp downstream
Tssr95910	transcription start site region 95910	1020 bp downstream
Tssr95911	transcription start site region 95911	912 bp downstream
Tssr95912	transcription start site region 95912	841 bp downstream
Tssr95913	transcription start site region 95913	764 bp downstream
Tssr95914	transcription start site region 95914	1702 bp upstream
Tssr95915	transcription start site region 95915	1780 bp upstream
Tssr99410	transcription start site region 99410	1480 bp upstream
Tssr99411	transcription start site region 99411	1402 bp upstream
Tssr99412	transcription start site region 99412	1296 bp upstream
Tssr99413	transcription start site region 99413	1243 bp upstream
Tssr99414	transcription start site region 99414	1129 bp upstream
Tssr99415	transcription start site region 99415	1069 bp upstream
Tssr99416	transcription start site region 99416	1002 bp upstream
Tssr99417	transcription start site region 99417	927 bp upstream
Tssr99418	transcription start site region 99418	908 bp upstream
Tssr99419	transcription start site region 99419	870 bp upstream
Tssr99420	transcription start site region 99420	812 bp upstream
Tssr99421	transcription start site region 99421	736 bp upstream
Tssr99422	transcription start site region 99422	14 bp upstream
Tssr99423	transcription start site region 99423	1735 bp downstream
Tssr99424	transcription start site region 99424	1803 bp downstream
Tssr99425	transcription start site region 99425	1848 bp downstream