rs582456289 SNP Detail

Summary

• ID
  rs582456289
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115519705 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAC ACACACACAC ACACACACAC
  M
  CCCGGAGGAA ATTTAGCACC GGAAG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	I/LnJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NZO/HlLtJ	RF/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss921102045	MGP_WTSI_11_115628879	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	A	C	C	C	C	C	C	C	C	A	C	C	C	C	C	A	C	C	A	A	A	C	C	A	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	I/LnJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NZO/HlLtJ	RF/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs582456289					SNP	C	C	C	C	C	A	C	C	C	C	C	C	C	C	A	C	C	C	C	C	A	C	C	A	A	A	C	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss921102045	MGP_WTSI_11_115628879	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115519705 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4144	CpG island 4144	400 bp distal
Gm74427	predicted gene, 74427	within coordinates
Rr246115	regulatory region 246115	within coordinates
Rr369445	regulatory region 369445	within coordinates
Slc25a19	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	584 bp upstream
Tssr105892	transcription start site region 105892	456 bp downstream
Tssr111780	transcription start site region 111780	1170 bp upstream
Tssr111781	transcription start site region 111781	1141 bp upstream
Tssr111782	transcription start site region 111782	1120 bp upstream
Tssr111783	transcription start site region 111783	1088 bp upstream
Tssr111784	transcription start site region 111784	757 bp upstream
Tssr111785	transcription start site region 111785	715 bp upstream
Tssr111786	transcription start site region 111786	629 bp upstream
Tssr111787	transcription start site region 111787	581 bp upstream