rs582504033 SNP Detail

Summary

• ID
  rs582504033
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:27402860 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAATC CAATCATCCC CCCCCCCCCC
  R
  GCACCAAGTG CTGGGAAAAG GCATG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	C57BL/6J	C57BL/10SnJ	CZECHII/EiJ	FVB/NJ	JF1/MsJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PWK/PhJ	QSi5/Ianm	RF/J	WSB/EiJ	ZALENDE/EiJ
ss915325997	MGP_WTSI_2_27512848	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	A	G	A	G	A	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	C57BL/6J	C57BL/10SnJ	CZECHII/EiJ	FVB/NJ	JF1/MsJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PWK/PhJ	QSi5/Ianm	RF/J	WSB/EiJ	ZALENDE/EiJ
rs582504033					SNP	G	G	G	G	G	G	A	G	A	G	A	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915325997	MGP_WTSI_2_27512848	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:27402860 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11378	CpG island 11378	1771 bp proximal
Gm74603	predicted gene, 74603	within coordinates
Gm74607	predicted gene, 74607	295 bp downstream
Rr56501	regulatory region 56501	1140 bp proximal