rs582526628 SNP Detail

Summary

• ID
  rs582526628
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170899156 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGCA GCGTGCAGAC AGGGAGAGCA
  T
  GAAGCGGGAA GACGTCTATG GGGTA                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CE/J	I/LnJ	JF1/MsJ	MOLF/EiJ	NOD/ShiLtJ	SEA/GnJ
ss915123922	MGP_WTSI_1_171071587	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CE/J	I/LnJ	JF1/MsJ	MOLF/EiJ	NOD/ShiLtJ	SEA/GnJ
rs582526628					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915123922	MGP_WTSI_1_171071587	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170899156 () rs orientation: forward

Symbol	Name	Function Class
Gm56232	predicted gene, 56232	639 bp downstream
n-TDgtc7	nuclear encoded tRNA aspartic acid 7 (anticodon GTC)	1406 bp downstream
n-TEctc8	nuclear encoded tRNA glutamic acid 8 (anticodon CTC)	205 bp downstream
n-TGtcc5	nuclear encoded tRNA glycine 5 (anticodon TCC)	747 bp downstream
Rr423202	regulatory region 423202	1144 bp distal
Rr423203	regulatory region 423203	9 bp proximal
Rr423204	regulatory region 423204	892 bp proximal