rs582555118 SNP Detail

Summary

• ID
  rs582555118
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:108637505 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCCT TACTCCTCGG CTCGTCCCCT
  Y
  CAGCAACTCC CCCCCCCCCG CCCCG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss918280251	MGP_WTSI_6_108660544	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs582555118					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss918280251	MGP_WTSI_6_108660544	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108637505 () rs orientation: forward

Symbol	Name	Function Class
0610040F04Rik	RIKEN cDNA 0610040F04 gene	within coordinates
4833447P13Rik	RIKEN cDNA 4833447P13 gene	1004 bp upstream
Bhlhe40	basic helix-loop-helix family, member e40	85 bp upstream
Cpgi17812	CpG island 17812	within coordinates
Gm17055	predicted gene 17055	951 bp downstream
Rr399817	regulatory region 399817	1038 bp upstream
Rr636154	regulatory region 636154	1533 bp distal
Rr636155	regulatory region 636155	607 bp distal
Rr636156	regulatory region 636156	within coordinates
Rr636157	regulatory region 636157	180 bp proximal
Rr636158	regulatory region 636158	365 bp proximal
Rr636159	regulatory region 636159	1059 bp proximal
Tssr58067	transcription start site region 58067	1923 bp downstream
Tssr58068	transcription start site region 58068	1874 bp downstream
Tssr58069	transcription start site region 58069	1774 bp downstream
Tssr58070	transcription start site region 58070	1731 bp downstream
Tssr58071	transcription start site region 58071	877 bp downstream
Tssr58072	transcription start site region 58072	98 bp downstream
Tssr58073	transcription start site region 58073	47 bp downstream
Tssr58074	transcription start site region 58074	10 bp downstream
Tssr58075	transcription start site region 58075	72 bp upstream
Tssr58076	transcription start site region 58076	228 bp upstream
Tssr58077	transcription start site region 58077	311 bp upstream
Tssr58078	transcription start site region 58078	1203 bp upstream
Tssr58079	transcription start site region 58079	1446 bp upstream
Tssr58080	transcription start site region 58080	1795 bp upstream
Tssr62390	transcription start site region 62390	1122 bp upstream
Tssr62391	transcription start site region 62391	721 bp upstream