rs582584399 SNP Detail

Summary

• ID
  rs582584399
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137178802 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAACG GTGGTTGTGA TTTCAGGTGT
  G
  GTGGTGACAT CAGCAGTGAT GGTGA                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss917727709	MGP_WTSI_5_137149954	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs582584399					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917727709	MGP_WTSI_5_137149954	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137178802 () rs orientation: forward

Symbol	Name	Function Class
Muc17	mucin 17, cell surface associated	within coordinates
Tssr1677	transcription start site region 1677	686 bp upstream
Tssr1678	transcription start site region 1678	530 bp downstream
Tssr1679	transcription start site region 1679	1473 bp downstream
Tssr1680	transcription start site region 1680	1493 bp upstream
Tssr1681	transcription start site region 1681	1516 bp downstream
Tssr1682	transcription start site region 1682	1533 bp downstream
Tssr1683	transcription start site region 1683	1622 bp downstream
Tssr1684	transcription start site region 1684	1638 bp downstream
Tssr1685	transcription start site region 1685	1652 bp upstream
Tssr1686	transcription start site region 1686	1679 bp downstream
Tssr1687	transcription start site region 1687	1730 bp downstream
Tssr1688	transcription start site region 1688	1754 bp downstream
Tssr1689	transcription start site region 1689	1773 bp upstream
Tssr1690	transcription start site region 1690	1940 bp upstream
Tssr1691	transcription start site region 1691	1944 bp downstream
Tssr49309	transcription start site region 49309	153 bp downstream
Tssr49310	transcription start site region 49310	184 bp upstream
Tssr49311	transcription start site region 49311	198 bp upstream
Tssr49312	transcription start site region 49312	578 bp upstream
Tssr49313	transcription start site region 49313	826 bp upstream
Tssr49314	transcription start site region 49314	1097 bp upstream
Tssr49315	transcription start site region 49315	1113 bp upstream
Tssr53919	transcription start site region 53919	306 bp upstream
Tssr53920	transcription start site region 53920	271 bp upstream
Tssr53921	transcription start site region 53921	113 bp upstream
Tssr53922	transcription start site region 53922	97 bp upstream
Tssr53923	transcription start site region 53923	55 bp upstream
Tssr53924	transcription start site region 53924	36 bp upstream
Tssr53925	transcription start site region 53925	4 bp upstream
Tssr53926	transcription start site region 53926	20 bp downstream
Tssr53927	transcription start site region 53927	169 bp downstream
Tssr53928	transcription start site region 53928	187 bp downstream
Tssr53929	transcription start site region 53929	224 bp downstream
Tssr53930	transcription start site region 53930	289 bp downstream
Tssr53931	transcription start site region 53931	314 bp downstream
Tssr53932	transcription start site region 53932	330 bp downstream
Tssr53933	transcription start site region 53933	368 bp downstream
Tssr53934	transcription start site region 53934	400 bp downstream
Tssr53935	transcription start site region 53935	451 bp downstream
Tssr53936	transcription start site region 53936	472 bp downstream
Tssr53937	transcription start site region 53937	562 bp downstream
Tssr53938	transcription start site region 53938	598 bp downstream
Tssr53939	transcription start site region 53939	652 bp downstream
Tssr53940	transcription start site region 53940	828 bp downstream
Tssr53941	transcription start site region 53941	868 bp downstream
Tssr53942	transcription start site region 53942	927 bp downstream
Tssr53943	transcription start site region 53943	1092 bp downstream
Tssr53944	transcription start site region 53944	1141 bp downstream
Tssr53945	transcription start site region 53945	1151 bp downstream
Tssr53946	transcription start site region 53946	1172 bp downstream
Tssr53947	transcription start site region 53947	1280 bp downstream