rs582602178 SNP Detail

Summary

• ID
  rs582602178
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:120598472 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAGC CCCAGCCCCA GCCCCAGCCC
  Y
  AGCCCCAGCC CCAGCCCCAG CCCCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CE/J	CZECHII/EiJ	MA/MyJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	RIIIS/J	SJL/J	SWR/J
ss921118381	MGP_WTSI_11_120707646	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CE/J	CZECHII/EiJ	MA/MyJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	RIIIS/J	SJL/J	SWR/J
rs582602178					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss921118381	MGP_WTSI_11_120707646	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:120598472 () rs orientation: forward

Symbol	Name	Function Class
Aspscr1	ASPSCR1 tether for SLC2A4, UBX domain containing	within coordinates
Gm17178	predicted gene 17178	within coordinates
Rr246346	regulatory region 246346	1871 bp distal
Rr246347	regulatory region 246347	within coordinates
Tssr106340	transcription start site region 106340	426 bp upstream
Tssr106341	transcription start site region 106341	455 bp upstream