rs582630099 SNP Detail

Summary

• ID
  rs582630099
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:72775142 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCCT TCCCTTCCCT TCCCTTCCCT
  Y
  CCCCTCCCTT GAATGAGTAT GCCCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CE/J	CZECHII/EiJ	FVB/NJ	LP/J	MA/MyJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SWR/J
ss921930161	MGP_WTSI_13_72627023	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CE/J	CZECHII/EiJ	FVB/NJ	LP/J	MA/MyJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SWR/J
rs582630099					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss921930161	MGP_WTSI_13_72627023	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:72775142 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5830	CpG island 5830	1539 bp distal
Cpgi5831	CpG island 5831	347 bp proximal
Gm20554	predicted gene, 20554	within coordinates
Irx2	Iroquois homeobox 2	1797 bp upstream
Rr273617	regulatory region 273617	459 bp proximal
Rr281620	regulatory region 281620	within coordinates
Tssr120305	transcription start site region 120305	1763 bp upstream
Tssr120306	transcription start site region 120306	1779 bp upstream
Tssr120307	transcription start site region 120307	1808 bp upstream
Tssr123170	transcription start site region 123170	1462 bp downstream
Tssr123171	transcription start site region 123171	1540 bp downstream
Tssr123172	transcription start site region 123172	1567 bp downstream