rs582631875 SNP Detail

Summary

• ID
  rs582631875
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88813716 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAAG AGAAGAGAAA GGAAAGGAAG
  R
  GAAGAGAAAA GAAGGGCTGG TGAGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	DBA/1J	I/LnJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	RF/J	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ
ss921005082	MGP_WTSI_11_88922890	EVA_MGPV3	EVA_MGPV3	f	SNP	G	A	G	G	G	A	A	A	A	A	A	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	DBA/1J	I/LnJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	RF/J	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ
rs582631875					SNP	G	A	G	G	G	A	A	A	A	A	A	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss921005082	MGP_WTSI_11_88922890	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88813716 () rs orientation: forward

Symbol	Name	Function Class
Scpep1	serine carboxypeptidase 1	1130 bp downstream
Scpep1os	serine carboxypeptidase 1, opposite strand	within coordinates
Tssr110047	transcription start site region 110047	1378 bp downstream
Tssr110048	transcription start site region 110048	1393 bp downstream
Tssr110049	transcription start site region 110049	1447 bp downstream
Tssr110050	transcription start site region 110050	1649 bp downstream
Tssr110051	transcription start site region 110051	1690 bp downstream
Tssr110052	transcription start site region 110052	1714 bp downstream
Tssr110053	transcription start site region 110053	1742 bp downstream
Tssr110054	transcription start site region 110054	1809 bp downstream