rs582633444 SNP Detail

Summary

• ID
  rs582633444
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:41771505 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTCC CTCCCTCCCT CCCTCCCTCC
  C
  TCCCTCCCTC CCTCCCTCCC TCTCT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	CE/J	LP/J	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
ss920341766	MGP_WTSI_10_41895509	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	CE/J	LP/J	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
rs582633444					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss920341766	MGP_WTSI_10_41895509	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:41771505 () rs orientation: forward

Symbol	Name	Function Class
Rr214767	regulatory region 214767	1305 bp distal
Rr219413	regulatory region 219413	696 bp proximal
Sesn1	sestrin 1	within coordinates
Tssr93071	transcription start site region 93071	1550 bp downstream
Tssr93072	transcription start site region 93072	1531 bp downstream