rs582639666 SNP Detail

Summary

• ID
  rs582639666
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:65519442 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATATA CAATCACACA TACACACACT
  M
  ATACCTACAC ACATATACAC TCACA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	DBA/1J	DBA/2J	LEWES/EiJ	SPRET/EiJ
ss924023850	MGP_WTSI_18_65386371	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	DBA/1J	DBA/2J	LEWES/EiJ	SPRET/EiJ
rs582639666					SNP	A	A	A	A	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss924023850	MGP_WTSI_18_65386371	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:65519442 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Alpk2	alpha-kinase 2			Intron
				Noncoding-Transcript-Variant
D18Mit182	DNA segment, Chr 18, Massachusetts Institute of Technology 182			1055 bp distal
Rr539524	regulatory region 539524			within coordinates
Tssr151600	transcription start site region 151600			328 bp downstream
Tssr151601	transcription start site region 151601			272 bp downstream