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rs582681399 SNP Detail
Summary
  • ID
    rs582681399
  • Variation Type
    SNP
  • Alleles
    T
Genome Location and Flanking Sequence
  • Location
    Chr5:137178792 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          CTGGT GAAATCAACG GTGGTTGTGA
T
TTCAGGTGTG GTGGTGACAT CAGCA                                      

T = T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CBA/J
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
LEWES/EiJ
LG/J
LP/J
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
WSB/EiJ
ZALENDE/EiJ
ss917727706 MGP_WTSI_5_137149944 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CBA/J
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
LEWES/EiJ
LG/J
LP/J
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
WSB/EiJ
ZALENDE/EiJ
rs582681399 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss917727706 MGP_WTSI_5_137149944 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr5:137178792 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Muc17 mucin 17, cell surface associated within coordinates
Tssr1677 transcription start site region 1677 676 bp upstream
Tssr1678 transcription start site region 1678 540 bp downstream
Tssr1679 transcription start site region 1679 1483 bp downstream
Tssr1680 transcription start site region 1680 1503 bp upstream
Tssr1681 transcription start site region 1681 1526 bp downstream
Tssr1682 transcription start site region 1682 1543 bp downstream
Tssr1683 transcription start site region 1683 1632 bp downstream
Tssr1684 transcription start site region 1684 1648 bp downstream
Tssr1685 transcription start site region 1685 1662 bp upstream
Tssr1686 transcription start site region 1686 1689 bp downstream
Tssr1687 transcription start site region 1687 1740 bp downstream
Tssr1688 transcription start site region 1688 1764 bp downstream
Tssr1689 transcription start site region 1689 1783 bp upstream
Tssr1690 transcription start site region 1690 1950 bp upstream
Tssr1691 transcription start site region 1691 1954 bp downstream
Tssr49309 transcription start site region 49309 143 bp downstream
Tssr49310 transcription start site region 49310 194 bp upstream
Tssr49311 transcription start site region 49311 208 bp upstream
Tssr49312 transcription start site region 49312 588 bp upstream
Tssr49313 transcription start site region 49313 836 bp upstream
Tssr49314 transcription start site region 49314 1107 bp upstream
Tssr49315 transcription start site region 49315 1123 bp upstream
Tssr53919 transcription start site region 53919 296 bp upstream
Tssr53920 transcription start site region 53920 261 bp upstream
Tssr53921 transcription start site region 53921 103 bp upstream
Tssr53922 transcription start site region 53922 87 bp upstream
Tssr53923 transcription start site region 53923 45 bp upstream
Tssr53924 transcription start site region 53924 26 bp upstream
Tssr53925 transcription start site region 53925 within coordinates
Tssr53926 transcription start site region 53926 30 bp downstream
Tssr53927 transcription start site region 53927 179 bp downstream
Tssr53928 transcription start site region 53928 197 bp downstream
Tssr53929 transcription start site region 53929 234 bp downstream
Tssr53930 transcription start site region 53930 299 bp downstream
Tssr53931 transcription start site region 53931 324 bp downstream
Tssr53932 transcription start site region 53932 340 bp downstream
Tssr53933 transcription start site region 53933 378 bp downstream
Tssr53934 transcription start site region 53934 410 bp downstream
Tssr53935 transcription start site region 53935 461 bp downstream
Tssr53936 transcription start site region 53936 482 bp downstream
Tssr53937 transcription start site region 53937 572 bp downstream
Tssr53938 transcription start site region 53938 608 bp downstream
Tssr53939 transcription start site region 53939 662 bp downstream
Tssr53940 transcription start site region 53940 838 bp downstream
Tssr53941 transcription start site region 53941 878 bp downstream
Tssr53942 transcription start site region 53942 937 bp downstream
Tssr53943 transcription start site region 53943 1102 bp downstream
Tssr53944 transcription start site region 53944 1151 bp downstream
Tssr53945 transcription start site region 53945 1161 bp downstream
Tssr53946 transcription start site region 53946 1182 bp downstream
Tssr53947 transcription start site region 53947 1290 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory